Chatake, T., Kurihara, K., Tanaka, I., Tsyba, I., Bau, R., Jenney, F. E., Adams, M. W. W. and Schoenborn, B. P. (2004) "A neutron diffraction study of a rubredoxin mutant at 1.6 Å resolution" Acta Cryst. 60, 1364-1373

Maher, M. J., Ghosh, M., Grunden, A. M., Adams, M. W. W., Freeman, H.C. and Guss, J. M. (2004) "Structure of the prolidase from Pyrococcus furiosus" Biochemistry 43, 2771-8327

Li, X., Langan, P., Bau, R., Tsyba, I., Jenney, F. E., Adams, M. W. W. and Schoenborn, B. P. (2004) "W3Y single mutant of rubredoxin from Pyrococcus furiosus: a preliminary time-of-flight neutron diffraction study" Acta Cryst. 60, 200-202

Verhees, C. H., Kengen, S. W. M., Tuininga,J. E., Schut, G. J., Adams, M. W. W., de Vos, W. M. and van der Oost, J. (2003) "The unique features of glycolytic pathways in archaea" Biochem. J. 375, 231-246

Calzolai, L., Haarklau, H., Brereton, P. S., Adams, M. W. W. and La Mar, G. N. (2003) "NMR investigation of the iron-sulfur cluster environment in the hyperthermostable ferredoxin from Pyrococcus furiosus" ACS Symp. Series, 858, 258-271

Lim, H., Hays, L. G., Eng, J., Tollaksen, S. L., Giometti, C. S., Holden, J. F., Adams, M. W. W., Reich, C. I., Olsen, G. J. and Yates, J. R. (2003) "Identification of 2D-gel proteins: A comparison of MALDI/TOF peptide mass mapping to µ-LC-ESI tandem mass spectrometry" J. Am. Soc. Mass Spec. 14, 957-970

Holden J, F. and Adams, M.W. W. (2003) "Unique aspects of the hyperthermophile proteome" Encyclopedia of Life Support Systems: Extremophiles, vol. 6.73 (Gerday, C. ed.), UNESCO, Paris, in press.

Sapra, R. Bagramyan, K., and Adams, M. W. W. (2003) "A simple energy conservation system: proton reduction coupled to proton translocation" Proc. Natl. Acad. Sci. USA 100, 7545-7550

Clay, M.D., Cosper, C. A., Jenney, F. E., Adams, M. W. W. and Johnson, M. K. (2003) "Nitric oxide binding at the mononuclear active site of reduced Pyrococcus furiosus superoxide reductase: Implications for the structural and electronic determinants of enzymatic superoxide reduction" Proc. Natl. Acad. Sci. USA 100, 3796-3801

Holden, J. F. and Adams, M. W. W. (2003) Microbe-metal interactions in marine hydrothermal vent environments. Curr. Opin. Chem. Biol. 7, 160-165

Adams, M. W. W., Dailey, H. A., DeLucas, L. J., Ming Lou, M., Prestegard, J. H., Rose, J. P. and Wang, B. C. (2003) "The SouthEast Collaboratory for Structural Genomics: a high-throughput gene to structure factory" Acc. Chem. Res. 36, 191-198

Bergmann, U., Sturhahn, W., Linn, Jr., D E., Jenney, Jr., F. E., Adams, M. W. W., Rupnick, K.,Hales, B. J., Alp, E. E., Mayse A., Callis, P. and S. P. Cramer, S. P. (2003) "Observation of Fe-H/D modes by nuclear resonant vibrational spectroscopy" J. Am. Chem. Soc. 125, 4016-4017

Schut, G. J., Brehm, S. D., Datta, S. and Adams, M. W. W. (2003) "Whole genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides" J. Bacteriol. (in press) (Supplementary Material)

Pan, G., Menon. A.L. and Adams. M. W. W. (2003) "Characterization of a basic [2Fe-2S]-cluster-containing protein from the Fe-only hydrogenase operon of Thermotoga maritima" J.Biol. Inorg. Chem. 8, 469-474.

Roy, R. and Adams, M. W. W. (2002) "Characterization of a fourth tungsten-containing enzyme from the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 184, 6952-6956

Sham, S., Calzolai, L., Wang, P.-L., Bren, K., Haarklau, H., Brereton, P. S., Adams, M. W. W. and La Mar, G. N. (2002) "A solution NMR molecular model for the aspartate-ligated, cubane cluster containing ferredoxin from the hyperthermophilic archeaon Pyrococcus furiosus" Biochemistry 41, 12498-12508

Clay, M. D., Jenney, F. E., Jr., Noh, H., Hagedoorn, P. L., Adams, M. W. W. and Johnson, M. K. (2002) "Resonance Raman characterization of the mononuclear iron active-site vibrations and putative electron transport pathways in Pyrococcus furiosus superoxide reductase" Biochemistry 41, 9833-9841

Srinivasan, V., Ma, K., Adams, M. W. W., Newton, M. G., Rose, J. P. and Wang, B.-C. (2002) "Towards the crystal structure of glycerol dehydrogenase from Thermotoga maritima" Acta. Cryst. 58,.867-869.

Adams, M. W. W., Jenney, F. E., Jr., Clay, M. D. and Johnson, M. K. (2002) "Superoxide reductase: fact or fiction?" J. Biol. Inorg. Chem. 7, 647-652 (Paper).

Kurihara, K., Tanaka, I., Adams, M. W. W., Jenney, F. E. Jr., Moiseeva, N., Bau, R. & Niimura, N. (2001) Neutron diffraction study on the structure of rubredoxin from Pyrococcus furiosus. J. Phys. Soc. Jpn. A70, 400-402.

Clay, M. D., Jenney, F. E., Jr., Hagedoorn, P. L., George, G. N., Adams, M. W. W. and Johnson, M. K. (2002) "Spectroscopic studies of Pyrococcus furiosus superoxide reductase: implications for active site structures and the catalytic mechanism" J. Am. Chem. Soc. 124, 788-805.

Roy, R. and Adams, M. W. W. (2002) "Tungsten-dependent aldehyde oxidoreductase: a new family of enzymes containing the pterin cofactor" Metals in Biol. Systems 39, 673-698.

Schut, G. J., Zhou, J. and Adams, M. W. W. (2001) "DNA microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus evidence for a new type of sulfur-reducing enzyme" J. Bacteriol. 183, 7027-7036 (Supplementary Material).

Holden, J. F., Poole, F. L., Tollaksen, S. L., Giometti, C. S., Lim, H., Yates, J. R. and Adams, M. W. W. (2001) "Identification of membrane proteins in the hyperthermophilic archaeon Pyrococcus furiosus using proteomics and prediction programs" Comp. Funct. Genomics2, 275-288 (Paper).

da Silva, M. W., Sham, S., Gorst, C. M., Calzolai, L., Brereton, P. S., Adams, M. W. W. and La Mar, G. N. (2001) "Solution NMR characterization of the thermodynamics of the disulfide bond orientational isomerism and its effect of cluster electronic properties for the hyperthermostable three-iron cluster ferredoxin from the archaeon Pyrococcus furiosus" Biochemistry 40, 12575-12583.

Johnson, K. A., Brereton, P. S., Verhagen, M. F. J. M., Calzolai, L., La Mar, G. N., Adams, M. W. W. and Amster, I. J. (2001) "A gallium-substituted cubane-type cluster in Pyrococcus furiosus ferredoxin" J. Am. Chem. Soc. 123, 7935-7936.

Roy, R., Dhawan, I. K., Johnson, M. K., Rees, D. C. and Adams, M. W. W. (2001) "Aldehyde ferredoxin oxidoreductase" In:  Handbook of Metalloproteins (Messerschmidt, A, Huber, R., Poulos, T. and Wieghardt, K., eds.), 1097-1108.

Roy, R., Dhawan, I. K., Johnson, M. K., Rees, D. C. and Adams, M. W. W. (2001) "Formaldehyde ferredoxin oxidoreductase" Handbook of Metalloproteins (Messerschmidt, A, Huber, R., Poulos, T. and Wieghardt, K., eds.), pp. 1086-1096.

Ma, K. and Adams, M. W. W. (2001) "Rubredoxin:NADP oxidoreductase from Pyrococcus furiosus" Meths. Enzymol. 334, 55-62.

Jenney, F. E., Jr., and Adams, M. W. W. (2001) Rubredoxin from Pyrococcus furiosus" Meths. Enzymol. 334, 45-55.

Ma, K. and Adams, M. W. W. (2001) "Ferredoxin:NADP oxidoreductase from Pyrococcus furiosus" Meths. Enzymol. 334, 40-45.

Kim, C. H., Brereton, P. S., Verhagen, M. F. J. M. and Adams, M. W. W. (2001) "Ferredoxin from Pyrococcus furiosus" Meths. Enzymol. 334, 30-40.

Pan, G., Verhagen, M. F. J. M., and Adams, M. W. W. (2001) "Characterization of pyridine nucleotide coenzymes from the hyperthermophilic archaeon Pyrococcus furiosus" Extremophiles (in press).

Ma, K. S., and Adams, M. W. W. (2001) "Hydrogenases I and II from Pyrococcus furiosus" Method. Enzymol. 331, 208-216.

Ma, K. S., and Adams, M. W. W. (2001) "Alcohol dehydrogenases from Thermococcus litoralis and Thermococcus strain ES-1" Method. Enzymol. 331, 195-201.

Hutchins, A. M., Mai, X. H., and Adams, M. W. W. (2001) "Acetyl-CoA synthetases I and II from Pyrococcus furiosus" Method. Enzymol. 331, 158-167.

Schut, G. J., Menon, A. L., and Adams, M. W. W. (2001) "2-keto acid oxidoreductases from Pyrococcus furiosus and Thermococcus litoralis" Method. Enzymol. 331, 144-158.

Roy, R., Menon, A. L., and Adams, M. W. W. (2001) "Aldehyde oxidoreductases from Pyrococcus furiosus" Method. Enzymol. 331, 132-144.

Verhagen, M. F. J. M., and Adams, M. W. W. (2001) "Fe-only hydrogenase from Thermotoga maritima" Method. Enzymol. 331, 216-226.

Story, S. V., Grunden, A. M., and Adams, M. W. W. (2001) "Characterization of an aminoacylase from the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. (in press).

Zartler, E. R., Jenney, F. E., Jr., Terrell, M., Eidsness, M. K., Adams, M. W. W., and Prestegard, J. H. (2001) "The structural basis for thermostability in apo-rubredoxins from Pyrococcus furiosus and Clostridium pasteurianum" Biochemistry (in press).

Willingham, K., Maher, M. J., Grunden, A. M., et al. (2001) "Crystallization and characterization of the prolidase from Pyrococcus furiosus" Acta Crystallogr. D 57, 2428-430.

Johnson, K. A., Verhagen, M. F. J. M., Adams, M. W. W., et al. (2001) "Differences between positive and negative ion stabilities of metal-sulfur cluster proteins: an electrospray ionization Fourier transform ion cyclotron resonance study" Int. J. Mass Spectrom. 204, 77-85.

Grunden, A. M., Ghosh, M., and Adams, M. W. W. (2001) "Proline dipeptidase from Pyrococcus furiosus" Method. Enzymol. 330, 433-445.

Verhagen, M. F. J. M., Menon, A. L., Schut, G. J., and Adams, M. W. W. (2001) "Pyrococcus furiosus: large-scale cultivation and enzyme purification" Method. Enzymol. 330, 25-30.

Verhagen, M. F. J. M., O'Rourke, T. W., Menon, A. L., and Adams, M. W. W. (2001) "Properties of the gamma-subunit of the Fe-only hydrogenase from Thermotoga maritima: a possible role in the synthesis of the holoenzyme" Biochim. Biophys. Acta 4503, 1-11.

Adams, M. W. W., Holden, J. F., Menon, A. L., Schut, G. J., et al. (2001) "Key role for sulfur in peptide metabolism and in regulation of three hydrogenases in the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 183, 716-724.

Hutchins, A. M., Holden, J. F., and Adams, M. W. W. (2001) "Phosphoenolpyruvate synthetase from the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 183, 709-715.

Tian, F., Fowler, C. A., Zartler, E. R., Jenney, F. E., Jr., Adams, M. W. W., and Prestegard, J. H. (2000) "Direct measurement of 1H-1H dipolar couplings in proteins: a complement to traditional NOR measurements" J. Biomol. NMR 18, 23-31.

Wang, H., Ralston, C. Y., Patil, D. S., Jones, R. M., Gu, W., Verhagen, M. F. J. M., Adams, M. W. W., Ge, P., Riordan, C., Marganian, C. A., Mascharak, P., Kovacs, J., Miller, C. G., Collins, T. J., Brooker, S., Croucher, P. D., Wang, W., Stiefel, E., and Cramer, S. P. (2000) "Nickel L-edge soft x-ray spectroscopy of nickel-iron hydrogenases and model compounds: evidence for high spin nickel (II) in the active enzyme" J. Am. Chem. Soc. 122, 10,544-10,522.