Publications are indexed in chronological order beginning with the most recent publications last.  Publication supplements and data sets are listed under the Data section. 
Present-351 350-301 300-251 250-201 200-151 150-101 100-51 50-1
 
Index Publication
300 Hamilton-Brehm, S. D., Schut, G. J. and Adams, M. W. W. (2009) "Antimicrobial activity of the iron sulfur nitroso compound Roussin's Black Salt (Fe4S3(NO)7) using the hyperthermophilic archaeon Pyrococcus furiosus" Appl. Environ. Microbiol. 75, 1820-1825
299 Kataeva, I. A., Yang, S.-J, Dam, P., Poole, F. L., Yin, Y., Zhou, F., Chou, W-c., Xu, Y., Goodwin, L., Sims, D. R., Detter, J. C., Hause, L. J., Westpheling, J. and Adams, M. W. W. (2009) "Genome Sequence of the anaerobic, thermophilic and cellulolytic bacterium Anaerocellum thermophilum DSM 6725" J. Bacteriol. 191, 3760-3761
298 Ye, X., Wang, Y., Hopkins, R. C., Adams, M. W. W., Evans, B. R., Mielenz, J. R. and Zhang, Y. H. (2009) "Spontaneous high-yield production of hydrogen from cellulosic materials and water catalyzed by enzyme cocktails.  Chem. Sus. Chem. 2, 149-152
297 Lipscomb, G. L., Keese, A. M., Cowart, D. M., Schut, G. J, Thomm, M., Adams, M. W. W. and Scott, R. A. (2009) "SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulfur metabolism in Pyrococcus furiosus" Mole. Micro. 71, 332-349
296 Ying, X., Grunden, A. M., Nie, L., Adams, M. W. W. and Ma, K. (2009) "Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic archaeon, Thermococcus strain ES1" Extremophiles 13, 299-311
295 Kalisiak, J., Trauger, S. A., Kalisiak, E., Morita, H., Fokin, V. V., Adams, M. W. W., Sharpless, K. B. and Siuzdak, G. (2009) "Identification of a new endogenous metabolite and the characterization of its protein interactions through an immobilization approach" J. Am. Chem. Soc. 131, 378-386
294 Menon, A. L., Poole, F. L., Cvetkovic, A., Trauger, S. A., Kalisiak, E., Scott, J. W., Shanmukh, S., Praissman, J., Jenney, F. E., Wikoff, W. R, Apon, J. V., Siuzdak, G. and Adams, M. W. W. (2009) "Novel protein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome" Mol. Cell. Proteomics 8, 735-751
293 Chou, C.-J, Jenney, F. E., Adams, M. W. W. and Kelly, R. M. (2008) "Hydrogenesis in hyperthermophilic microorganisms: implications for biofuels" Metabolic Engineering 10, 394-404
292
Blumer-Schuette, S., Kataeva, I., Westpheling, J., Adams, M. W. W. and Kelly, R. M. (2008) "Extremely thermophilic microorganisms for biomass conversion: status and prospects" Curr. Op. Biotechnology 19, 1-8
291
Jenney, F. E., Jr., and Adams, M. W. W. (2008) "Hydrogenases of the model hyperthermophiles" Ann. N.Y. Acad. Sci. 1125, 252-266
290
Bansal, S., Miao, X., Adams, M. W. W., Prestegard, J. H. and Valafar, H. (2008) "Rapid classification of protein structure models using unassigned backbone RDCs and probability density profile analysis (PDPA)" J. Mag. Resonance 60-68
289
Shaw, A. J., Jenney, F. E., Jr., Adams, M. W. W. and Lynd, L. (2008) "End-product pathways in the xylose fermenting bacterium, Thermoanaerobacterium saccharolyticum" Enz. Micro. Technol. 453-458
288
Trauger, S. A., Kalisak, E., Kalisiak, J., Morita, H., Weinberg, M.V., Menon, A. L., Poole, F. L., Adams, M. W. W. and Siuzdak, G. (2008) Correlating the Transcriptome, Proteome, and Metabolome in the Environmental Adaptation of a Hyperthermophile. J. Proteome. Res. Feb 2; 1027-1035
287
Jenney, F. E., Jr. and Adams, M. W. W. (2008) "The impact of structural genomics on extremophiles (and vice versa)" Extremophiles 12, 39-50
286
Dey, A., Jenney, F. E., Jr., Adams, M. W. W., Babini, E., Takahashi, Y., Fukuyama, K., Hodgson, K. O., Hedman, B. and Solomon, E. I. (2007) "Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin" Science 318, 1464-1468
285
Chou, C. J., Shockley, K. R., Conners, S. B., Lewis, D. L., Comfort, D. A., Adams, M. W. W. and Kelly, R.M. (2007) "Impact of substrate glycoside linkage and elemental sulfur on bioenergetics and hydrogen production by the hyperthermophilic archaeon Pyrococcus furiosus" Appl. Environ. Microbiol. 73, 6842-6853
284
Dey, A., Jenney Jr., F. E., Adams, M. W. W., Johnson, M. K., Hodgson, K. O., Hedman, B. and Solomon, E. I. "Sulfur K-edge XAS and DFT calculations on superoxide reductase: Role of the axial thiolate in reactivity" J. Am. Chem. Soc. 129, 12418-31
283
Vondrasek, J., Kubar, T., Jenney, F. E. Jr., Adams, M. W. W., Kozisek, M., Cerny, J., Sklenar, V. and Hobza, P. (2007) "Dispersion interactions govern the strong thermal stability of a protein" Chemistry 13, 9022-9027
282
Kelley, L. L., Dillard, B. D., Tempel, W., Chen, L., Shaw, N., Lee, D., Newton, M. G., Sugar, F. J., Jenney, F. E. Jr., Lee, H. S., Shah, C., Poole, F. L., Adams, M. W. W., Richardson, J. S., Richardson, D. C., Liu, Z. J., Wang, B. C. and Rose, J. (2007) "Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution" Acta Cryst. 63, 549-552
281
Cacciapuoti, G., Porcelli. M., Moretti, M. A., Zappia,V., Liu, Z.-J., Tempel, W., Schubot, F., Rose, J. P., Wang, B.-C., Brereton, P. S., Jenney, F. E. and Adams, M. W. W. (2007) "The first agmantine/cadaverine aminopropyl transferase: biochemical and structural characterization of the enzyme involved in polyamine biosynthesis in the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 189, 6057-6067
280
Zhu, J., Fu, X., Koo, Y. D., Zhu, J. K., Jenney, F. E., Jr., Adams, M. W. W., Zhu, Y., Shi, H., Yun, D. J., Hasegawa, P. M. and Bressan, R. A. (2007) "An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response" Mol. Cell. Biol. 27, 5214-5224
279
Gerwe, B., Kelley, L.-L. K., Dillard, B. D., Lai, T., Liu, Z.-J., Tempel, W., Chen, L., Habel, J., Lee, D., Jenney, F. E. Jr., Sugar, F. J., Richardson, J. S., Richardson, D. C., Newton, M. G., Wang, B.-C., Adams, M. W. W. and Rose, J. P. (2007) "Structural and transcriptional analyses of a purine nucleotide-binding protein from Pyrococcus furiosus: a component of a novel, membrane-bound multiprotein complex unique to this hyperthermophilic archaeon" J. Struct. Funct. Genomics 8, 1-10
278
Zhang, Y. H. P., Evans, B. R., Mielenz, J. R., Hopkins, R. C. and Adams, M. W. W. (2007) "High yield hydrogen production from starch and water by a synthetic enzyme pathway" PLoS One 5, e456 (1-6)
277
Schut, G., Bridger, S. L. and Adams, M. W. W.  (2007) "Insights into the metabolism of elemental sulfur by the hyperthermophilic archaeon Pyrococcus furiosus:  characterization of a coenzyme A-dependent NAD(P)H sulfur oxidoreductase" J. Bacteriol. 189, 4431-4441
276
Adams, M. W. W., Jenney, F. E. Jr., Chou, C.-J., Hamilton-Brehm, S., Poole, F. L., Shockley, K. R., Tachdjian, S. and Kelly, R. M. (2007) Transcriptomics, Proteomics and Structural Genomics of Pyrococcus furiosus. Archaea: Evolution, Physiology, and Molecular Biology (Garrett, R. and Klenk, H.-P., eds.), Blackwell, 239-246
275
Jenney, F. E. Jr., Tachdjian, S., Chou, C.-J., Kelly, R. M. and Adams, M. W. W. (2007) Functional Genomics.  Archaea: Molecular and Cellular Biology (Cavicchioli, R., ed.) Blackwell, 434-462
274
Tran, T. T., Dam, P., Su, P., Poole, F. P., Adams, M. W. W., Zhou, G. T. and Xu, Y. (2007) "Operon prediction in Pyrococcus furiosus" Nucleic Acid Res. 35, 11-20
273
Wang, X., Lee, H.-S., Sugar, F., Jenney, F. E., Adams, M. W. W. and Prestegard, J. H. (2007) PF0610, a novel winged HTH variant possessing a rubredoxin-like Zn-ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus" Biochemistry 46, 752-761
272
Tan, M. L., Bizzarri, A. R., Xiao, Y., Cannistraro, S., Ichiye, T., Manzoni, C., Cerullo,G., Adams, M. W. W., Jenney, F. E. and Cramer, S. P. (2007) "Observation of terahertz vibrations in Pyrococcus furiosus rubredoxin via impulsive coherent vibrational spectroscopy and nuclear resonance vibrational spectroscopy - Interpretation by molecular mechanics" J. Inorg. Biochem. 101, 375-384
271
Mayer, K. L., Qu, Y., Bansal, S., Leblond, P. D., Jenny, F. E. Jr., Brereton, P. S., Adams, M. W. W., Xu, Y, and Prestegard, J. H. (2006) "Structure of a novel protein from backbone-centered NMR data and NMR-assisted structure prediction" Proteins 65, 480-489
270
Yang, T.-C. , McNaughton, R. L., Clay, M. D., Jenney, Jr., F. E., Krishnan, R., Kurtz, Jr., D. M., Adams, M. W. W., Johnson, M. K. and Hoffman, B. M. (2006) "Comparing the electronic properties of the low-spin cyano-ferric [Fe(N4)(Cys)] active sites of superoxide reductase and P450cam using ENDOR spectroscopy and DFT calculations"  J. Am. Chem. Soc. 128, 16566-16578
269
Tucker, G. S., Brown, H. M., Fryer, P. J., Cos, P. W., Poole, F. L., Lee, H.-S. and Adams, M. W. W. (2006) "A sterilisation time-temperature integrator based on amylase from the hyperthermophilic organism Pyrococcus furiosus" Innov. Food Sci. Emerg. Tech. 8, 63-72
268
Lee, H.-S., Shockley, K. R., Schut, G. J., Conners, S. B., Montero, C. I., Johnson, M. R., Chou, C.-J., Bridger, S. L., Wigner, N., Brehm, S. D., Jenney, F. E.,  Jr., Comfort, D. A., Kelly, R. M. and Adams, M. W. W. (2006) "Transcriptional and biochemical analysis of starch metabolism in the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 188, 2115-2125
267
Clay, M. D., Yang, T. C., Jenney, F. E. Jr., Kung, I. Y., Cosper, C. A., Krishnan, R., Kurtz, D. M., Jr., Adams, M. W. W., Hoffman, B. M., and Johnson, M. K. (2006) "Geometries and electronic structures of cyanide adducts of the non-heme iron active site of superoxide reductases: vibrational and ENDOR studies" Biochemistry 17, 427-438
266
Poole, F. L., Gerwe, B. A., Hopkins, R. C., Schut, G. J., Weinberg, M. V., Jenney, F. E., Jr., and Adams, M. W. W. (2005) "Defining genes in the genome of the hyperthermophilic archaeon Pyrococcus furiosus: implications for all microbial genomes" J. Bacteriol. 187, 7325-7332
265
Xiao, Y., Dey, A., Wang, H. George, S. J., Smith, M. C., Adams, M. W. W., Jenney, F. E., Jr., Sturhahn, W., Alp, E. E., Yoda, J., Solomon, E. I., and Cramer, S. P. (2005) Normal mode analysis of Pyrococcus furiosus rubredoxin via nuclear resonant vibrational spectroscopy (NRVS) and resonance Raman spectroscopy" J. Am. Chem. Soc. 127, 14596-145606
264
Hamilton-Brehm, S., Schut, G. and Adams, M. W. W. (2005) "Metabolic and evolutionary relationships amongst Pyrococcus species: genetic exchange in the same hydrothermal vent environment" J. Bacteriol. 187, 7492-7499
263
Eichler, J. and Adams, M. W. W. (2005) "Post-translational protein modification in archaea" Mole. Microbiol. 69, 393-425
262
Wang, B. C., Adams, M. W. W., Dailey, H., DeLucas, L., Luo, M., Rose, J., Bunzel, R., Dailey, T., Habel, J., Horanyi, P., Jenney, F. E., Kataeva, I., Li, S., Lin, D., Liu, Z.-J., Luan, C. H., Mayer, M., Nagy, L., Newton, M. G., Ng, J., Poole, F., Shah, A. and Xu, H. (2005) "Protein production and crystallization at the SECSG – an overview" J. Struct. Funct. Genomics 6, 233-243
261
Scott, R. A., Shokes, J. E., Cosper, N. J., Jenney, F. E. and Adams, M. W. W. (2005) Bottlenecks and roadblocks in high-throughput XAS for structural genomics.  J. Synchrotron Res. 5, 241-254
260
Valafar, H., Mayer, K. L., Bougault, C. M., LeBlond, P. D., Jenney, F. E., Jr., Brereton, P. S., Adams, M. W. W. and Prestegard, J. H. (2005) Backbone solution structures of proteins using residual dipolar couplings: Application to a novel structural genomics target" J. Struct. Funct. Genomics 5, 241-254
259
Sugar, F. J., Jenney, F. E., Jr., Poole, F. L. Brereton, P. S., Izumi, M., Shah, C. and Adams., M. W. W. (2005) "Comparison of small- and large-scale expression of selected Pyrococcus furiosus genes as an aid to high-throughput protein production" J. Struct. Funct. Genomics 5, 241-254
258
Story, S. V. Shah, C., Jenney, F. E. and Adams, M. W. W. (2005) " Characterization of a novel zinc-containing lysine aminopeptidase from the hyperthermophilic archaeon Pyrococcus furiosus" J. Bacteriol. 187, 2077-2083
257
Jenney, Jr. F. E., Brereton, P. S., Izumi, M., Poole II, F. L., Shah, C., Sugar, F. J., Lee, H.-S. and Adams , M. W. W. (2005) "High throughput production of Pyrococcus furiosus proteins - considerations for metalloproteins" J. Synchrotron Radiation 12, 19-22
256
Johnston , W., Cooney, M. J., Liaw, B. Y., Sapra, R. and Adams, M. W. W. (2005) "The design and characterization of redox enzyme electrodes: new perspectives on established techniques with application to an extremophilic hydrogenase" Enz. Microb. Tech. 36, 540-549
255
Kurihara, K., Tanaka, I. , Chatake, T., Adams, M. W. W., Jenney Jr., F. E., Moiseeva, N., Bau, R. and Niimura, N.  (2004) "Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules" Proc. Nat. Acad. Sci. 101, 11215-11220
254
Grunden, A. M., Jenney, F. E., Jr., Ma, K., Ji, M., Weinberg, M. V. and Adams, M. W. W. (2005) "In vitro reconstitution of a NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus" Appl. Environ. Microbiol. 71, 1522-1530
253
Weinberg, M. V., Jenney, F. E., Jr., Cui, X. and Adams , M. W. W. (2004) "Rubrerythrin from the hyperthermophilic archaeon Pyrococcus furiosus is a rubredoxin-dependent, iron-containing peroxidase" J. Bacteriol. 186, 7888-7895
252
Weinberg, M. V., Schut, G. J., Brehm,  S., Datta, S. and Adams, M. W. W. (2005) Cold shock of a hyperthermophilic archaeon: Pyrococcus furiosus exhibits multiple responses to a suboptimal growth temperature with a key role for membrane-bound glycoproteins. J Bacteriol. 187, 336-348 (Supplementary Material)
251
Tempel, W., Liu, Z-J.,. Schubot, F. D., Weinberg, M. V., Jenney, F. E., Jr, Adams , M. W. W., Rose, J. P. and Wang, B-C. (2004) "Structural genomics of Pyrococcus furiosus: X-Ray crystallography reveals 3D domain swapping in rubrerythrin" Proteins 57, 878-882
   
Present-351 350-301 300-251 250-201 200-151 150-101 100-51 50-1