Publications are indexed in chronological order beginning with the most recent publications last.  Publication supplements and data sets are listed under the Data section. 
Present-351 350-301 300-251 250-201 200-151 150-101 100-51 50-1
 
Index Publication
350
Schut, G. J., Lipscomb, G. L., Han, Y., Notey, J. S., Kelly, R. M. and Adams, M. W. W. (2014) "Order and Family Thermococcales" In: The Prokaryotes: Other Major Lineages of Bacteria and the Archaea, DOI 10.1007/978-3-642-38954-2_324, Springer-Verlag
349
Brunecky, R., Alahuhta, M., Xu, Q., Donohoe, B. S., Crowley, M. F., Kataeva, I. A., Yang, S. J., Resch, M. G., Adams, M. W. W., Lunin, V. V., Himmel, M. E. and Bomble, Y. J. (2013) Revealing Nature's cellulose diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA" Science 341, 1513-1516
348
Kataeva, I., Foston, M., Yang, S-J., Pattathil, S., Biswal, A. K., Poole, F. L., Basen, M., Rhaesa, A. M., Thomas, T. P., Azidi, P., Olman, V., Safford, T., D., Mohler, K. E., Lewis, D. L., Doeppke, C., Zeng, Y., Tschaplinski, T., York, W. S., Davis, M., Mohnen, D., Ying Xu, Ragauskas, A., Ding, S.-Y., Kelly, R. M., Hahn, M. G. and Adams, M. W. W. (2013) "Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature" Energy Environ. Sci. 6, 2186-2195
347
Zhu, Y., Kumar, S., Menon, A. L., Scott, R. A. and Adams, M. W. W. (2013) "Regulation of Iron Metabolism by Pyrococcus furiosus" J. Bacteriol. 185, 2400-2407
346
del Campo, J. S. M., Rollin, J., Myung, S., Chun, Y., Chandrayan, S., Patiño, R. Adams, M. W. W. and Zhang, Y.-H. (2013) "High-yield dihydrogen production from xylose through cell-free synthetic cascade enzymes" Angew. Chemie 55, 4587-4590
345
Keller, M., Schut, G. J., Lipscomb, G. L., Menon, A., Iwuchukwu, I., Leuko, T., Thorgersen, M. P., Nixon, W. J., Hawkins, A., Kelly, R. M. and Adams, M. W. W. (2013) "Exploiting microbial hyperthermophilicity to produce an industrial chemical using hydrogen and carbon dioxide" Proc. Natl. Acad. Sci. U.S.A. 110, 5840-5845
344
Hawkins, A. S., McTernan, P., Lian, H., Kelly, R. M. and Adams, M. W.W. (2013) "Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals" Curr. Opin. Biotechnol. 24, 376-384
343
Kamali, S., Wang, H., Mitra, D., Ogata, H., Lubitz, H., Manor, B. C., Rauchfuss, T. B., Byrne, D., Bonnefoy, V., Jenney, F. E., Adams, M. W. W., Yoda, Y., Alp, E., Zhao, J. and Cramer, S. P. (2013) "Observation of the Fe-CN and Fe-CO vibrations in the active site of [NiFe] hydrogenase by nuclear resonance vibrational spectroscopy" Angew. Chemie 52, 724-728
342
Pang, W. L., Kaur. A., Ratushny, A. V., Cvetkovic, A., Kumar, S., Pan, M., Arkin, A. P., Aitchison, J. D., Adams, M. W. W. and Baliga, N. S. (2013) "Metallochaperones regulate intracellular Cu levels" PLOS Comput. Biol. 9, e1002880
341
Hawkins, A. S., Han, Y., Bennett, R. K., Adams, M. W. W. and Kelly, R. M. (2013) "Role of 4-hydroxybutyrate-CoA synthetase in the CO2 fixation cycle in thermoacidophilic archaea" J. Biol. Chem. 288, 4012-4022
340
Schut, G. J., Boyd, E. S., Peters, J. W and Adams, M. W. W. (2012) "The modular respiratory complexes involved in hydrogen and sulfur metabolism by heterotrophic hyperthermophilic archaea and their evolutionary implications" FEMS Microbiol. Rev. 37, 182-203
339
Alahuhta, M., Brunecky, R., Chandrayan, P., Kataeva, I., Adams, M. W. W., Himmel, M. E. and Lunin, V. V. (2013) "The structure and mode of action of Caldicellulosiruptor bescii family 3 pectate lyase In biomass deconstruction" Acta. Crystallography , 69, 534-539
338
Thorgersen, M. P., Stirrett, K., Scott, R. A. and Adams, M. W. W. (2012) "Mechanism of oxygen detoxification by the surprisingly oxygen-tolerant hyperthermophilic Archaeon, Pyrococcus furiosus" Proc. Natl. Acad. Sci. USA 109, 18547-18552
337
Guo, Y., Brecht, E., Aznavour, K., Nix, J. C., Xiao, Y., Wang, H., George, S. J., Bau, R., Keable, S., Peters, J. W., Adams, M. W. W., Jenney, F. E., Sturhahn, W., Alp, E. E., Zhao , J., Yoda, Y. and Cramer, S. P. (2012) "Nuclear resonance vibrational spectroscopy (NRVS) of rubredoxin and MoFe protein crystals" Hyperfine Interact. DOI: 10.1007/s10751-012-0643-2
336
Crécy-Lagard, V., Phillips, G, Grochowski, L. L. , Yacoubi, B. E., Jenney, F. E., Adams, M. W. W., Murzin A. G. and White, R. H. (2012) "Comparative genomics guided discovery and confirmation of two missing archaeal enzyme families involved in the biosynthesis of the pterin moiety of methanopterin and tetrahydrofolate" ACS Chem. Biol. 7, 1807-1816
335
Han, Y., Hawkins, A., Adams, M. W. W. and Kelly, R. M. (2012) "Epimerase (Msed_0639) and mutase (Msed_0638, Msed_2055) convert (S)-methylmalonyl-CoA to succinyl-CoA in the Metallosphaera sedula 3-hydroxypropionate/4-hydroxybutyrate cycle" Appl. Environ. Microbiol. 78, 6194-6202
334
Bridger, S. L, Lancaster, W. A., Poole, F. L., Schut, G. J. and Adams, M. W. W. (2012) "Genome sequencing of a genetically-tractable Pyrococcus furiosus strain reveals a highly dynamic genome" J. Bacteriol. 194, 4097-4106
333
Blumer-Schuette, S. E, Giannone, R. J., Zurawski, J.V., Ozdemir, I., Ma, Q., Yin, Y., Xu, Y., Kataeva, I., Poole, F. L., Adams, M. W. W., Hamilton-Brehm, S. D., Elkins, J. G., Larimer, F. W., Land, M. L., Hauser, L., Cottingham, R. W., Hettich, R. L. and Kelly, R. M. (2012) "Caldicellulosiruptor core and pan genomes reveal determinants for non-cellulosomal thermophilic deconstruction of plant biomass" J. Bacteriol. 194, 4105-4028
332
Schut, G. J., Nixon, W. J., Lipscomb, G. L., Scott, R. A. and Adams, M. W. W. (2012) "Mutational analyses of the enzymes involved in the metabolism of hydrogen by the hyperthermophilic archaeon Pyrococcus furiosus" Frontiers in Microbiology 3, 163 (epub)
331
Vaccaro, B. J., Menon, A. L., Lancaster, W. A. and Adams, M. W. W. (2012) "Metallomics using Inductively Coupled Plasma Mass Spectrometry" Current Protocols in Chemical Biology, 249–274 DOI: 10.1002/9780470559277.ch120031
330
Farkas, J., Stirrett, K., Lipscomb, G., Nixon, W., Scott, R. A., Adams, M. W. W. and Westpheling, J. (2012) "The recombinogenic properties of the Pyrococcus furiosus COM1 strain enable rapid selection of targeted mutants" Appl. Environ. Microbiol. 78, 4669-4676
329
Basen, M., Sun, J. and Adams, M. W. W. (2012) "Engineering a hyperthermophilic archaeon for temperature-dependent product formation" mBio 3, e00053-12
328
Chandrayan, S. K., McTernan, P. M., Hopkins, R. C., Sun, J., Jenney, F. E. and Adams, M. W. W. (2011) "Engineering the hyperthermophilic archaeon Pyrococcus furiosus to overproduce its cytoplasmic [NiFe]-Hydrogenase" J. Biol. Chem. 287, 3257-3264
327
Hawkins, A. S., Han, Y. J., Lian, H., Loder, A. J., Menon, A. L., Iwuchukwu, I. J., Keller, M., Leuko, T. T., Adams, M. W. W. and Kelly, R. M. (2011) "Extremely thermophilic routes to microbial electrofuels" ACS Catalysis 1, 1043-1050
326
Yannone, S. M., Hartung, S., Menon, A. L., Adams, M. W. and Tainer, J. A. (2011) "Metals in biology: defining metalloproteomes" Curr. Opin. Biotechnol. 23, 89-95
325
Hopkins, R. C., Sun, J., Jenney, F. E., Chandrayan, S. K., McTernan, P. M. and Adams, M. W. W. (2011) "Homologous expression of a subcomplex of Pyrococcus furiosus hydrogenase that interacts with pyruvate ferredoxin oxidoreductase" PLoS ONE 6, e26569, Oct 24 (epub).
324
Bridger, S. L., Clarkson, S. M., Stirrett, K., DeBarry, M. D., Lipscomb, G. L., Schut, G. J., Westpheling, J., Scott, R. A., Adams, M. W. W. (2011) "Deletion strains reveal metabolic roles for key elemental sulfur responsive proteins in Pyrococcus furiosus". J. Bacteriol. 193, 6498-6504
323
Alahuhta, M., Chandrayan, P., Kataeva, I., Adams, M. W. W., Himmel, M. E. and Lunin, V. V. (2011) "The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii" Acta Cryst. 67, 1498-1500
322
Yoon, S. H., Reiss, J. R., Bare, J. C., Tenenbaum, D., Pan, M., Slagel, J., Lim, S., Hackett, M., Menon, A. L., Adams, M. W. W., Yannone, S. M., Leigh, J. A., and Baliga, N. S. (2011) "Parallel evolution of transcriptome structure during genome reorganization" Genome Research 21, 1892-1904
321
Holden, J. F., Menon, A. L. and Adams, M. W. W. (2011) "Hyperthermophile-metal interactions in hydrothermal vent environments" In: Microbial Metal and Metalloid Metabolism: Advances and Applications, Stolz J. F. and Oremland, R. S., Eds., pp. 39-62, ASM Press, Washington, DC
320
Farkas, J., Chung, D., DeBarry, M., Adams, M. W. W. and Westpheling, J. (2011) Defining the minimum components of the chromosomal origin of replication of the hyperthermophilic anaerobe, Pyrococcus furiosus, required for construction of a stable replicating shuttle vector" Appl. Environ. Microbiol. 77, 6343-6349
319
Dillard, B. D., Demick, J. M., Adams, M. W. W. and Lanzilotta, W. N. (2011) "A cryo-crystallographic time course for peroxide reduction by rubrerythrin from Pyrococcus furiosus" J. Biol. Inorg. Chem. 16, 949-959
318
Blumer-Schuette, S.E., Ozdemir, I., Mistry, D., Lucas, S., Lapidus, A., Cheng, J.F., Goodwin, L.A., Pitluck, S.L., Hauser, L.J., Woyke, T., Mikhailova, N., Pati, A., Kyrpides, N.C., Ivanova, N., Detter, J.C., Walston-Davenport, K., Han, S., Adams, M.W.W. and Kelly, R.M. (2011) "Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus." J Bacteriol. 193, 1483-1484.
317
Mitra, D., Pelmenschikov, W., Guo, Y., Case, D. A., Wang, H., Dong, W., Jenney, F. E., Adams, M. W. W. and Cramer, S. P. (2011) Dynamics of the [4Fe-4S] cluster in Pyrococcus furiosus ferredoxin via nuclear resonance vibrational spectroscopy (NRVS) and resonance Raman spectroscopy - quantitative simulation by density functional theory calculations" Biochemistry 50, 5220-5235
316
Lancaster, W. A., Praismann, J. L., Poole, F. L., Cvetkovic, A., Menon, A. L., Scott, J. W., Poole, F. L., Jenney, F. E., Thorgersen, M., Kalisiak, E., Apon, J. V., Trauger, S. A., Siuzdak, G., Tainer, J. A. and Adams, M. W. W. (2011) "A computational framework for proteome-wide pursuit and prediction of metalloproteins using ICP-MS and MS/MS data" BMC Bioformatics 12, 64 (Web Site)
315
Lipscomb, G. L., Stirrett, K., Schut, G. J., Yang, F., Jenney, F. E, Jr., Scott, R. A., Adams, M. W. W. and Westpheling, J. (2011) "Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: use for constructing multiple markerless deletions of genes encoding two cytoplasmic hydrogenases" Appl. Environ. Microbiol. 77, 2232-2238
314
Dam, P., Kataeva, I., Yang, S.-J., Zhou, F, Yin, Y., Chou, W., Poole, F. L., Westpheling, J., Hettich, R., Giannone, R., Lewis, D. L. , Kelly, R. M., Gilbert, H. J., Henrissat, B., Xu, Y. and Adams, M. W. W. (2011) "Insights into plant biomass to biofuel conversion from the genome sequence of the extremely thermophilic bacterium Caldicellulosiruptor bescii DSM 6725" Nucleic Acids Res. 39, 3240-3254
313
Clarkson, S. M., Newcomer, E. C., Young, E. G. and Adams, M. W. W. (2010) "The elemental sulfur responsive protein (SipA) from the hyperthermophilic archaeon Pyrococcus furiosus is regulated by sulfide in an iron-dependent manner" J. Bacteriol. 192, 5841-5843
312
Lancaster, W. A. and Adams, M. W. W. (2011) "The influence of environment and metabolic capacity on the size of a microorganism" The Minimal Cell: The Biophysics of Cell Compartment and the Origin of Cell Functionality, Luisi, P. L. and Stano, P. (eds.), Springer, Netherlands, 93-103
311
Cvetkovic, A., Menon, A. L., Thorgersen, M., Scott, J. W., Poole, F. L., Jenney, F. E., Lancaster, W. A., Praismann, J. L., Shanmukh, S., Vaccaro, B., Trauger, S. A., Kalisiak, E., Apon, J. V., Siuzdak, G., Yannone, S. M., Tainer, J. A. and Adams, M. W. W. (2010) "Microbial metalloproteomes are largely uncharacterized" Nature 466, 779-782
310
Yang, H., Lipscomb, G. L., Keese, A. M., Schut, G. J., Thomm, M., Adams, M. W. W., Wang, B. C., and Scott, R. A., (2010) "SurR regulates hydrogen production in Pyrococcus furiosus by a sulfur-dependent redox switch" Mole. Microbiol. 77, 1111-1122
309
Sun, J., Hopkins, R. C., Jenney, F. E., McTernan, P. M. and Adams, M. W. W. (2010) "Heterologous expression and maturation of an NADP-dependent [NiFe]-hydrogenase: a key enzyme in biofuel production" PLoS ONE 5, e10526
308
Tonzetich, Z., J., Wang, H., Mehta, D., Tinberg, C. E., Do, L., Jenney, F. E., Adams, M. W. W., Cramer, S. P. and Lippard, S. J. (2010) "Identification of protein-bound dinitrosyl iron complexes by nuclear resonance vibrational spectrsocopy" J. Am. Chem. Soc. 132, 6914-6916
307
Strand, K. R., Sun, C., Li, T., Jenney, F. E., Jr., Schut, G. and Adams, M. W. W. (2010) "Oxidative stress response induced by hydrogen peroxide in the hyperthermophilic archaeon Pyrococcus furiosus and in related species" Arch. Microbiol. 192, 447-459
306
Keese, A. M., Schut, G. J., Ouhammouch, M., Adams, M. W. W. and Thomm, M. (2010) "Genome-wide identification of targets for the archaeal heat-shock regulator Phr by cell-free transcription of genomic DNA" J. Bacteriol. 192, 1292-1298
305
Yang, S.-J., Kataeva, I., Wiegel, J., Yin, Y., Dam, P., Xu, Y., Westpheling, J. and Adams, M. W. W. (2009) "Reclassification of 'Anaerocellum thermophilum' DSM 6725 as Caldicellulosiruptor bescii strain DSM 6725T sp. nov" Int. J. Syst. Evol. Microbiol. 60, 2011-2015.
304
Yang, S.-J., Kataeva, I., Hamilton-Brehm, S. D., Engle, N. E., Tschaplinski, T. J., Doeppke, C., Davis, M., Westpheling, J. and Adams, M. W. W. (2009) "Efficient degradation of lignocellulosic plant biomass without pretreatment by the thermophilic anaerobe, Anaerocellum thermophilum DMS 6725" Appl. Environ. Microbiol. 75, 4762-4769
303
Baker, S. E., Hopkins, R. C., Blanchette, C. D., Walsworth, V. L., Sumbad, R., Fischer, N. O., Kuhn, E. A., Coleman, M., Chromy, B. A., Létant, S. E., Hoeprich, P. D., Adams, M. W. W., and Henderson, P. T. (2009) "Hydrogen production by a hyperthermophilic membrane-bound hydrogenase in soluble nanolipoprotein particles" J. Am. Chem. Soc. 131, 7508-7509
302
Hura, G. L., Menon, A. L., Hammel, M., Rambo, R., Poole, F. L., Tsutakawa, S., Jenney, F. E., Classen, S., Frankel, L., Hopkins, R. C., Yang, S.-J., Scott, J. W., Dillard, B. D., Adams, M. W. W. and Tainer, J. A. (2009) "Rapid and robust proteomics-scale structural analyses determined by x-ray solution scattering (SAXS)"  Nature Methods 6, 606 - 612
301
Schut, G. J. and Adams, M. W. W. (2009) "The iron-hydrogenase of Thermotoga maritima uses ferredoxin and NADH synergistically: a new perspective on anaerobic hydrogen production" J. Bacteriol. 191, 4451-4457
   
Present-351 350-301 300-251 250-201 200-151 150-101 100-51 50-1